HPL recipe for target 'build' failed *** [build] Error 2

도커에서 겨우겨우 실행시켰던 HPL...

호스트에서 돌려보려고 하니 또 문제가 생겼다.

HPL recipe for target 'build' failed *** [build] Error 2 에러가 난다.

 

해결해보자.

 

1. openmpi 확인
2. 각종 라이브러리 확인
3. hpl make파일 확인

 

 

 

 

1. openmpi가 잘 설치되었나 확인해보기

 

- openmpi 다운받기 : https://www.open-mpi.org/software/ompi/v4.0/

 

- 다운받은 압축파일을 풀고, 해당 폴더(top folder라고 하겠다)에서 `$ ./configure --prefix="/usr/local/openmpi"`

 

- top folder에서 `$ make install`

 

- 환경변수 설정 (아까 configure로 설정한 폴더):

$ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/openmpi/lib

$ export PATH=$PATH:/usr/local/openmpi/bin

$ source ~/.bashrc

 

- openmpi 설치 확인하기

$ which mpicc
$ which mpirun
$ which mpiexec

위 명령어를 실행했을 때 잘 나오지 않는다면 openmpi를 설치하며 어디 빠뜨린 곳이 없나 확인해보자.

 

 

 

2. 각종 라이브러리 확인

 

- 라이브러리 설치

$ sudo apt install -y liblapack3 &&
  apt install -y libopenblas-base &&
  apt install -y libopenblas-dev && 
  apt install -y liblapacke-dev &&
  apt install -y liblapack-dev    
 

 

- 라이브러리 설치 위치 확인

$ find /usr/lib -name "blas"

 

3. hpl make파일 확인

hpl에 있는 `Make.<arch>`을 열어, 안에 있는 링크들이 잘못 설정되지 않았나 확인한다.

 

-Make.<arch>에서 건드려야 하는 부분:

TOPdir  = <hpl top directory>
MPdir = <openmpi 설치 폴더>
MPinc = -I$(MPdir)/include
MPlib = <openmpi lib위치>
                 $(MPdir)/lib/libmpi.so 혹은 libmpi.la
LAdir = <Linear Algebra library 설치 위치>
                  `find -name "blas"로 찾은 곳`
LAinc = 공백
LAlib = < Linear Algebra library >
                 $(LAdir)/libblas.a $(LAdir)/liblapack.a
CCFLAGS = $원래 있던 내용 뒤에 덧붙이기 -lm -lblas -llapack -llapacke -pthread
LINKER = <포트란 컴파일러> /usr/bin/gfortran

 

* Make.<arch>가 TOP dir에 있어야 함!

* 그래도 안 되면 폴더 전체를 삭제 후 다시 시도해볼것

 

이렇게 했더니 됐다 (linux64bit, openmpi, openblas 기준)

#  
#  -- High Performance Computing Linpack Benchmark (HPL)                
#     HPL - 2.3 - December 2, 2018                          
#     Antoine P. Petitet                                                
#     University of Tennessee, Knoxville                                
#     Innovative Computing Laboratory                                 
#     (C) Copyright 2000-2008 All Rights Reserved                       
#                                                                       
#  -- Copyright notice and Licensing terms:                             
#                                                                       
#  Redistribution  and  use in  source and binary forms, with or without
#  modification, are  permitted provided  that the following  conditions
#  are met:                                                             
#                                                                       
#  1. Redistributions  of  source  code  must retain the above copyright
#  notice, this list of conditions and the following disclaimer.        
#                                                                       
#  2. Redistributions in binary form must reproduce  the above copyright
#  notice, this list of conditions,  and the following disclaimer in the
#  documentation and/or other materials provided with the distribution. 
#                                                                       
#  3. All  advertising  materials  mentioning  features  or  use of this
#  software must display the following acknowledgement:                 
#  This  product  includes  software  developed  at  the  University  of
#  Tennessee, Knoxville, Innovative Computing Laboratory.             
#                                                                       
#  4. The name of the  University,  the name of the  Laboratory,  or the
#  names  of  its  contributors  may  not  be used to endorse or promote
#  products  derived   from   this  software  without  specific  written
#  permission.                                                          
#                                                                       
#  -- Disclaimer:                                                       
#                                                                       
#  THIS  SOFTWARE  IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
#  ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES,  INCLUDING,  BUT NOT
#  LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
#  A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE UNIVERSITY
#  OR  CONTRIBUTORS  BE  LIABLE FOR ANY  DIRECT,  INDIRECT,  INCIDENTAL,
#  SPECIAL,  EXEMPLARY,  OR  CONSEQUENTIAL DAMAGES  (INCLUDING,  BUT NOT
#  LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
#  DATA OR PROFITS; OR BUSINESS INTERRUPTION)  HOWEVER CAUSED AND ON ANY
#  THEORY OF LIABILITY, WHETHER IN CONTRACT,  STRICT LIABILITY,  OR TORT
#  (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
#  OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 
# ######################################################################
#  
# ----------------------------------------------------------------------
# - shell --------------------------------------------------------------
# ----------------------------------------------------------------------
#
SHELL        = /bin/sh
#
CD           = cd
CP           = cp
LN_S         = ln -s
MKDIR        = mkdir
RM           = /bin/rm -f
TOUCH        = touch
#
# ----------------------------------------------------------------------
# - Platform identifier ------------------------------------------------
# ----------------------------------------------------------------------
#
#ARCH         = Linux_Intel64
ARCH = x86_64
#
# ----------------------------------------------------------------------
# - HPL Directory Structure / HPL library ------------------------------
# ----------------------------------------------------------------------
#
TOPdir       = $(HOME)/Desktop/MPI/hpl
INCdir       = $(TOPdir)/include
BINdir       = $(TOPdir)/bin/$(ARCH)
LIBdir       = $(TOPdir)/lib/$(ARCH)
#
HPLlib       = $(LIBdir)/libhpl.a
#
# ----------------------------------------------------------------------
# - Message Passing library (MPI) --------------------------------------
# ----------------------------------------------------------------------
# MPinc tells the  C  compiler where to find the Message Passing library
# header files,  MPlib  is defined  to be the name of  the library to be
# used. The variable MPdir is only used for defining MPinc and MPlib.
#
# MPdir        = /opt/intel/mpi/4.1.0
MPdir = /usr/local/openmpi
MPinc        = -I$(MPdir)/include
MPlib        = $(MPdir)/lib/libmpi.so
#
# ----------------------------------------------------------------------
# - Linear Algebra library (BLAS or VSIPL) -----------------------------
# ----------------------------------------------------------------------
# LAinc tells the  C  compiler where to find the Linear Algebra  library
# header files,  LAlib  is defined  to be the name of  the library to be
# used. The variable LAdir is only used for defining LAinc and LAlib.
#
LAdir = /usr/lib/x86_64-linux-gnu/openblas
LAinc = 
LAlib = $(LAdir)/libblas.a $(LAdir)/liblapack.a 
#
# ----------------------------------------------------------------------
# - F77 / C interface --------------------------------------------------
# ----------------------------------------------------------------------
# You can skip this section  if and only if  you are not planning to use
# a  BLAS  library featuring a Fortran 77 interface.  Otherwise,  it  is
# necessary  to  fill out the  F2CDEFS  variable  with  the  appropriate
# options.  **One and only one**  option should be chosen in **each** of
# the 3 following categories:
#
# 1) name space (How C calls a Fortran 77 routine)
#
# -DAdd_              : all lower case and a suffixed underscore  (Suns,
#                       Intel, ...),                           [default]
# -DNoChange          : all lower case (IBM RS6000),
# -DUpCase            : all upper case (Cray),
# -DAdd__             : the FORTRAN compiler in use is f2c.
#
# 2) C and Fortran 77 integer mapping
#
# -DF77_INTEGER=int   : Fortran 77 INTEGER is a C int,         [default]
# -DF77_INTEGER=long  : Fortran 77 INTEGER is a C long,
# -DF77_INTEGER=short : Fortran 77 INTEGER is a C short.
#
# 3) Fortran 77 string handling
#
# -DStringSunStyle    : The string address is passed at the string loca-
#                       tion on the stack, and the string length is then
#                       passed as  an  F77_INTEGER  after  all  explicit
#                       stack arguments,                       [default]
# -DStringStructPtr   : The address  of  a  structure  is  passed  by  a
#                       Fortran 77  string,  and the structure is of the
#                       form: struct {char *cp; F77_INTEGER len;},
# -DStringStructVal   : A structure is passed by value for each  Fortran
#                       77 string,  and  the  structure is  of the form:
#                       struct {char *cp; F77_INTEGER len;},
# -DStringCrayStyle   : Special option for  Cray  machines,  which  uses
#                       Cray  fcd  (fortran  character  descriptor)  for
#                       interoperation.
#
F2CDEFS      =
#F2CDEFS      = -DAdd__ -DF77_INTEGER=int -DStringSunStyle
#
# ----------------------------------------------------------------------
# - HPL includes / libraries / specifics -------------------------------
# ----------------------------------------------------------------------
#
HPL_INCLUDES = -I$(INCdir) -I$(INCdir)/$(ARCH) $(LAinc) $(MPinc)
HPL_LIBS     = $(HPLlib) $(LAlib) $(MPlib)
#
# - Compile time options -----------------------------------------------
#
# -DHPL_COPY_L           force the copy of the panel L before bcast;
# -DHPL_CALL_CBLAS       call the cblas interface;
# -DHPL_CALL_VSIPL       call the vsip  library;
# -DHPL_DETAILED_TIMING  enable detailed timers;
#
# By default HPL will:
#    *) not copy L before broadcast,
#    *) call the BLAS Fortran 77 interface,
#    *) not display detailed timing information.
#
HPL_OPTS     = -DHPL_DETAILED_TIMING -DHPL_PROGRESS_REPORT
#
# ----------------------------------------------------------------------
#
HPL_DEFS     = $(F2CDEFS) $(HPL_OPTS) $(HPL_INCLUDES)
#
# ----------------------------------------------------------------------
# - Compilers / linkers - Optimization flags ---------------------------
# ----------------------------------------------------------------------
#
#CC       = mpiicc
#CC = mpic++
#OMP_DEFS = -openmp
CC = /usr/bin/gcc
CCNOOPT  = $(HPL_DEFS)
CCFLAGS  = $(HPL_DEFS) -fomit-frame-pointer -O3 -funroll-loops -lm -lblas -llapack -llapacke -pthread
#
# On some platforms,  it is necessary  to use the Fortran linker to find
# the Fortran internals used in the BLAS library.
#
#LINKER       = $(CC)
LINKER = /usr/bin/gfortran
LINKFLAGS    = $(CCFLAGS)
#
ARCHIVER     = ar
ARFLAGS      = r
RANLIB       = echo
#
# ----------------------------------------------------------------------